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  5. Solyc12g056490.1.1

Solyc12g056490.1.1


Description : CDH1-type (APC/C)-dependent ubiquitination activator protein


Gene families : OG0000394 (Archaeplastida) Phylogenetic Tree(s): OG0000394_tree ,
OG_05_0001854 (LandPlants) Phylogenetic Tree(s): OG_05_0001854_tree ,
OG_06_0001931 (SeedPlants) Phylogenetic Tree(s): OG_06_0001931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056490.1.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Gb_41288 No alias CDH1-type (APC/C)-dependent ubiquitination activator protein 0.03 Archaeplastida
Mp7g12950.1 No alias CDH1-type (APC/C)-dependent ubiquitination activator protein 0.03 Archaeplastida
Pp3c21_3130V3.1 No alias Transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 196 267
IPR001680 WD40_repeat 291 326
IPR001680 WD40_repeat 331 371
IPR001680 WD40_repeat 420 456
No external refs found!