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  5. Solyc12g056540.1.1

Solyc12g056540.1.1


Description : histone (H3)


Gene families : OG0000119 (Archaeplastida) Phylogenetic Tree(s): OG0000119_tree ,
OG_05_0000124 (LandPlants) Phylogenetic Tree(s): OG_05_0000124_tree ,
OG_06_0000125 (SeedPlants) Phylogenetic Tree(s): OG_06_0000125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056540.1.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00240080 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.09 Archaeplastida
AMTR_s00018p00168390 No alias Histone H3.2 OS=Pisum sativum 0.04 Archaeplastida
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
AT1G09200 No alias Histone superfamily protein 0.09 Archaeplastida
AT3G27360 No alias Histone superfamily protein 0.1 Archaeplastida
AT5G10390 No alias Histone superfamily protein 0.06 Archaeplastida
AT5G10400 No alias Histone superfamily protein 0.11 Archaeplastida
AT5G65360 No alias Histone superfamily protein 0.09 Archaeplastida
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.09 Archaeplastida
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.1 Archaeplastida
Cre06.g265500 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.12 Archaeplastida
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.14 Archaeplastida
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.14 Archaeplastida
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.14 Archaeplastida
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.15 Archaeplastida
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.17 Archaeplastida
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.15 Archaeplastida
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.1 Archaeplastida
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.14 Archaeplastida
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.11 Archaeplastida
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.12 Archaeplastida
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.11 Archaeplastida
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.11 Archaeplastida
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.11 Archaeplastida
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.15 Archaeplastida
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.11 Archaeplastida
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.15 Archaeplastida
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.14 Archaeplastida
GSVIVT01009838001 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
GSVIVT01025316001 No alias Histone H3.2 OS=Pisum sativum 0.03 Archaeplastida
GSVIVT01025318001 No alias Histone H3.2 OS=Pisum sativum 0.07 Archaeplastida
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.03 Archaeplastida
GSVIVT01027073001 No alias Cell cycle.mitosis and meiosis.chromosome... 0.07 Archaeplastida
GSVIVT01032047001 No alias Histone H3 OS=Volvox carteri 0.06 Archaeplastida
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.09 Archaeplastida
Gb_08475 No alias histone (H3) 0.03 Archaeplastida
Gb_15586 No alias histone (H3) 0.03 Archaeplastida
Gb_19430 No alias histone (H3) 0.08 Archaeplastida
Gb_27618 No alias histone (H3) 0.07 Archaeplastida
Gb_29026 No alias histone (H3) 0.05 Archaeplastida
Gb_29027 No alias histone (H3) 0.03 Archaeplastida
Gb_30564 No alias histone (H3) 0.14 Archaeplastida
Gb_36661 No alias histone (H3) 0.08 Archaeplastida
Gb_40804 No alias histone (H3) 0.12 Archaeplastida
LOC_Os01g64640.1 No alias histone (H3) 0.19 Archaeplastida
LOC_Os02g25910.1 No alias histone (H3) 0.03 Archaeplastida
LOC_Os03g27310.2 No alias histone (H3) 0.05 Archaeplastida
LOC_Os04g34240.1 No alias histone (H3) 0.1 Archaeplastida
LOC_Os05g36280.1 No alias histone (H3) 0.13 Archaeplastida
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.06 Archaeplastida
LOC_Os06g04030.1 No alias histone (H3) 0.07 Archaeplastida
LOC_Os06g06460.1 No alias histone (H3) 0.07 Archaeplastida
LOC_Os06g06480.1 No alias histone (H3) 0.02 Archaeplastida
LOC_Os06g06510.1 No alias histone (H3) 0.05 Archaeplastida
LOC_Os11g05730.1 No alias histone (H3) 0.12 Archaeplastida
LOC_Os12g22680.1 No alias histone (H3) 0.03 Archaeplastida
MA_10432805g0020 No alias histone (H3) 0.08 Archaeplastida
MA_113838g0010 No alias histone (H3) 0.1 Archaeplastida
MA_125055g0020 No alias Histone H3.2 OS=Cichorium intybus (sp|q5mya4|h32_cicin : 122.0) 0.13 Archaeplastida
MA_1527811g0010 No alias No annotation 0.05 Archaeplastida
MA_17527g0010 No alias histone (H3) 0.05 Archaeplastida
MA_197719g0010 No alias histone (H3) 0.1 Archaeplastida
MA_210354g0010 No alias histone (H3) 0.08 Archaeplastida
MA_222556g0010 No alias Histone H3.2 OS=Lilium longiflorum (sp|q402e1|h32_lillo : 116.0) 0.04 Archaeplastida
MA_24261g0010 No alias histone (H3) 0.04 Archaeplastida
MA_356208g0010 No alias histone (H3) 0.13 Archaeplastida
MA_475294g0010 No alias histone (H3) 0.04 Archaeplastida
MA_561217g0010 No alias histone (H3) 0.09 Archaeplastida
MA_56411g0010 No alias histone (H3) 0.07 Archaeplastida
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.07 Archaeplastida
MA_871602g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp3g07730.1 No alias histone (H3) 0.02 Archaeplastida
Mp3g09090.1 No alias histone (H3) 0.08 Archaeplastida
Mp3g22050.1 No alias histone H3 variant (CENH3) 0.05 Archaeplastida
Mp7g10730.1 No alias histone (H3) 0.03 Archaeplastida
Mp7g16200.1 No alias histone (H3) 0.02 Archaeplastida
Mp7g18030.1 No alias histone (H3) 0.03 Archaeplastida
Pp3c18_14470V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c18_14481V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c1_20670V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c20_8550V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c23_15100V3.1 No alias Histone superfamily protein 0.1 Archaeplastida
Pp3c24_11100V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c24_13230V3.1 No alias Histone superfamily protein 0.07 Archaeplastida
Pp3c8_2810V3.1 No alias Histone superfamily protein 0.06 Archaeplastida
Smo103546 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Smo176603 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Smo269004 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Zm00001e008155_P001 No alias histone (H3) 0.1 Archaeplastida
Zm00001e008160_P001 No alias histone (H3) 0.07 Archaeplastida
Zm00001e014760_P001 No alias histone (H3) 0.05 Archaeplastida
Zm00001e016861_P001 No alias histone (H3) 0.12 Archaeplastida
Zm00001e018263_P001 No alias histone (H3) 0.09 Archaeplastida
Zm00001e019170_P001 No alias histone (H3) 0.08 Archaeplastida
Zm00001e029901_P001 No alias histone (H3) 0.05 Archaeplastida
Zm00001e036599_P001 No alias histone (H3) 0.08 Archaeplastida
Zm00001e040856_P001 No alias histone (H3) 0.11 Archaeplastida
Zm00001e040876_P001 No alias no hits & (original description: none) 0.13 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!