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  5. Solyc12g056910.2.1

Solyc12g056910.2.1


Description : no hits & (original description: none)


Gene families : OG0009722 (Archaeplastida) Phylogenetic Tree(s): OG0009722_tree ,
OG_05_0010125 (LandPlants) Phylogenetic Tree(s): OG_05_0010125_tree ,
OG_06_0011314 (SeedPlants) Phylogenetic Tree(s): OG_06_0011314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056910.2.1
Cluster HCCA: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
AT1G22140 No alias unknown protein; Has 40 Blast hits to 40 proteins in 14... 0.06 Archaeplastida
LOC_Os03g26791.1 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10434506g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c13_8980V3.1 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0071569 protein ufmylation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR032378 ZC3H15/TMA46_C 10 72
No external refs found!