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  5. Solyc12g062203.1.1

Solyc12g062203.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana (sp|q9zt94|polr2_arath : 126.0)


Gene families : OG0000940 (Archaeplastida) Phylogenetic Tree(s): OG0000940_tree ,
OG_05_0000578 (LandPlants) Phylogenetic Tree(s): OG_05_0000578_tree ,
OG_06_0000281 (SeedPlants) Phylogenetic Tree(s): OG_06_0000281_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g062203.1.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Solyc01g067403.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 Archaeplastida
Solyc02g077865.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g090397.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g083965.1.1 No alias No annotation 0.02 Archaeplastida
Solyc04g017625.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc04g055225.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.04 Archaeplastida
Solyc04g074865.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc05g006325.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc05g025953.1.1 No alias No annotation 0.07 Archaeplastida
Solyc05g050887.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g051385.1.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc06g009015.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 Archaeplastida
Solyc06g048943.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc07g015873.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 Archaeplastida
Solyc07g019433.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.02 Archaeplastida
Solyc08g066927.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g051255.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida
Solyc10g076435.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g085205.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g039785.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc12g039205.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 2 82
No external refs found!