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  5. Solyc12g062550.1.1

Solyc12g062550.1.1


Description : Ribulose bisphosphate carboxylase large chain OS=Solanum lycopersicum (sp|p27065|rbl_sollc : 181.0)


Gene families : OG0001030 (Archaeplastida) Phylogenetic Tree(s): OG0001030_tree ,
OG_05_0000707 (LandPlants) Phylogenetic Tree(s): OG_05_0000707_tree ,
OG_06_0000483 (SeedPlants) Phylogenetic Tree(s): OG_06_0000483_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g062550.1.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.01 Archaeplastida
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.01 Archaeplastida
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.01 Archaeplastida
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.04 Archaeplastida
GSVIVT01013856001 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.01 Archaeplastida
GSVIVT01022403001 No alias Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.01 Archaeplastida
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.01 Archaeplastida
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.01 Archaeplastida
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.12 Archaeplastida
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.01 Archaeplastida
LOC_Os01g58020.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.06 Archaeplastida
LOC_Os10g21268.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
LOC_Os12g10580.1 No alias component psRPS15 of small ribosomal subunit proteome 0.05 Archaeplastida
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 Archaeplastida
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
Solyc04g039840.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Vigna... 0.04 Archaeplastida
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.04 Archaeplastida
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.15 Archaeplastida
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.04 Archaeplastida
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.08 Archaeplastida
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.09 Archaeplastida
Zm00001e042351_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.09 Archaeplastida
Zm00001e042465_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000685 RuBisCO_lsu_C 1 101
No external refs found!