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  5. AMTR_s00033p00158320

AMTR_s00033p00158320 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.103

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS11 component


Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree ,
OG_06_0002184 (SeedPlants) Phylogenetic Tree(s): OG_06_0002184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00158320
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.26 Archaeplastida
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.1 Archaeplastida
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.21 Archaeplastida
Cpa|evm.model.tig00000551.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Cre12.g514500 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 Archaeplastida
GSVIVT01012877001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
GSVIVT01035927001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
Gb_14912 No alias component RPS11 of SSU proteome 0.09 Archaeplastida
Gb_27579 No alias component RPS11 of SSU proteome 0.04 Archaeplastida
LOC_Os04g42380.1 No alias component RPS11 of SSU proteome 0.06 Archaeplastida
LOC_Os04g52361.1 No alias component RPS11 of SSU proteome 0.18 Archaeplastida
LOC_Os08g10608.1 No alias component RPS11 of SSU proteome 0.17 Archaeplastida
MA_19350g0010 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.26 Archaeplastida
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.19 Archaeplastida
Pp3c14_9600V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.2 Archaeplastida
Pp3c1_27980V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.21 Archaeplastida
Pp3c2_13690V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Archaeplastida
Pp3s116_30V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.22 Archaeplastida
Smo268639 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Solyc06g073790.3.1 No alias component RPS11 of SSU proteome 0.2 Archaeplastida
Solyc06g073800.3.1 No alias component RPS11 of SSU proteome 0.15 Archaeplastida
Solyc12g042080.2.1 No alias component RPS11 of SSU proteome 0.17 Archaeplastida
Zm00001e006955_P001 No alias component RPS11 of SSU proteome 0.21 Archaeplastida
Zm00001e041635_P001 No alias component RPS11 of SSU proteome 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 143
No external refs found!