Solyc12g070270.2.1


Description : subfamily ABCB transporter


Gene families : OG0001563 (Archaeplastida) Phylogenetic Tree(s): OG0001563_tree ,
OG_05_0007198 (LandPlants) Phylogenetic Tree(s): OG_05_0007198_tree ,
OG_06_0008022 (SeedPlants) Phylogenetic Tree(s): OG_06_0008022_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g070270.2.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT1G70610 ATTAP1, TAP1 transporter associated with antigen processing protein 1 0.03 Archaeplastida
GSVIVT01005757001 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
GSVIVT01008121001 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Gb_35052 No alias subfamily ABCB transporter 0.03 Archaeplastida
LOC_Os01g68330.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_10428929g0010 No alias ABC transporter B family member 26, chloroplastic... 0.03 Archaeplastida
Mp1g18530.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Zm00001e018873_P003 No alias subfamily ABCB transporter 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004813 alanine-tRNA ligase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006419 alanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006536 glutamate metabolic process IEP Neighborhood
BP GO:0006537 glutamate biosynthetic process IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
MF GO:0015930 glutamate synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 130 395
No external refs found!