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  5. AMTR_s00033p00166000

AMTR_s00033p00166000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.111

Description : RNA biosynthesis.transcriptional activation.PLATZ transcription factor


Gene families : OG0000197 (Archaeplastida) Phylogenetic Tree(s): OG0000197_tree ,
OG_05_0000880 (LandPlants) Phylogenetic Tree(s): OG_05_0000880_tree ,
OG_06_0001431 (SeedPlants) Phylogenetic Tree(s): OG_06_0001431_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00166000
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00211460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
AMTR_s00008p00208550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PLATZ... 0.05 Archaeplastida
AT1G32700 No alias PLATZ transcription factor family protein 0.02 Archaeplastida
AT2G12646 No alias PLATZ transcription factor family protein 0.04 Archaeplastida
Cre02.g095950 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.01 Archaeplastida
GSVIVT01012125001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.03 Archaeplastida
GSVIVT01012869001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
GSVIVT01031446001 No alias RNA biosynthesis.transcriptional activation.PLATZ... 0.04 Archaeplastida
LOC_Os01g33370.1 No alias transcription factor (PLATZ) 0.04 Archaeplastida
LOC_Os02g07650.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
LOC_Os02g09070.1 No alias transcription factor (PLATZ) 0.09 Archaeplastida
LOC_Os02g46610.1 No alias transcription factor (PLATZ) 0.02 Archaeplastida
LOC_Os04g50120.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
MA_10310g0010 No alias transcription factor (PLATZ) 0.06 Archaeplastida
MA_12209g0020 No alias transcription factor (PLATZ) 0.02 Archaeplastida
Pp3c13_4760V3.1 No alias PLATZ transcription factor family protein 0.02 Archaeplastida
Pp3c26_11480V3.1 No alias PLATZ transcription factor family protein 0.03 Archaeplastida
Pp3c3_3180V3.1 No alias PLATZ transcription factor family protein 0.03 Archaeplastida
Pp3c4_30530V3.1 No alias PLATZ transcription factor family protein 0.02 Archaeplastida
Solyc07g007320.3.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc08g005100.3.1 No alias transcription factor (PLATZ) 0.03 Archaeplastida
Solyc12g010470.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e013865_P001 No alias transcription factor (PLATZ) 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
InterPro domains Description Start Stop
IPR006734 DUF597 49 120
No external refs found!