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  5. Solyc12g088720.2.1

Solyc12g088720.2.1


Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000771 (Archaeplastida) Phylogenetic Tree(s): OG0000771_tree ,
OG_05_0000645 (LandPlants) Phylogenetic Tree(s): OG_05_0000645_tree ,
OG_06_0001351 (SeedPlants) Phylogenetic Tree(s): OG_06_0001351_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088720.2.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT1G49760 PAB8, PABP8 poly(A) binding protein 8 0.04 Archaeplastida
AT2G23350 PABP4, PAB4 poly(A) binding protein 4 0.03 Archaeplastida
Cpa|evm.model.tig00001264.28 No alias Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
Cre01.g039300 No alias Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
GSVIVT01022079001 No alias Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
Gb_00731 No alias mRNA poly-A-tail binding factor (PABP) 0.04 Archaeplastida
LOC_Os06g38980.1 No alias mRNA poly-A-tail binding factor (PABP) 0.02 Archaeplastida
LOC_Os09g02700.1 No alias mRNA poly-A-tail binding factor (PABP) 0.03 Archaeplastida
MA_111003g0010 No alias mRNA poly-A-tail binding factor (PABP) 0.04 Archaeplastida
Mp7g18970.1 No alias mRNA poly-A-tail binding factor (PABP) 0.04 Archaeplastida
Pp3c10_4970V3.1 No alias poly(A) binding protein 2 0.02 Archaeplastida
Pp3c14_4340V3.1 No alias poly(A) binding protein 8 0.06 Archaeplastida
Pp3c1_21530V3.1 No alias poly(A) binding protein 4 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 226 294
IPR000504 RRM_dom 329 397
IPR000504 RRM_dom 47 117
IPR000504 RRM_dom 135 203
IPR002004 PABP_HYD 575 641
No external refs found!