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  5. Solyc12g094385.1.1

Solyc12g094385.1.1


Description : E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana (sp|q8l9w3|atl23_arath : 131.0)


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001331 (LandPlants) Phylogenetic Tree(s): OG_05_0001331_tree ,
OG_06_0000478 (SeedPlants) Phylogenetic Tree(s): OG_06_0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g094385.1.1
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.04 Archaeplastida
AMTR_s00019p00162990 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.04 Archaeplastida
AMTR_s00044p00112360 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00056p00124480 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT2G04240 XERICO RING/U-box superfamily protein 0.04 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.03 Archaeplastida
AT3G62690 ATL5 AtL5 0.03 Archaeplastida
AT5G01880 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G20885 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01019585001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_20844 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os01g11480.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g60730.2 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_280399g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_51630g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c13_4710V3.1 No alias TOXICOS EN LEVADURA 2 0.03 Archaeplastida
Pp3c17_13190V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e002430_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 75 119
No external refs found!