Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.135
Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component
Gene families : OG0000971 (Archaeplastida) Phylogenetic Tree(s): OG0000971_tree ,
OG_05_0003359 (LandPlants) Phylogenetic Tree(s): OG_05_0003359_tree ,
OG_06_0003442 (SeedPlants) Phylogenetic Tree(s): OG_06_0003442_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00033p00183310 | |
Cluster | HCCA: Cluster_261 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G80480 | PTAC17 | plastid transcriptionally active 17 | 0.03 | Archaeplastida | |
Gb_00365 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
Gb_13256 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.02 | Archaeplastida | |
LOC_Os02g55630.1 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.05 | Archaeplastida | |
MA_10426227g0010 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
MA_10426462g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
MA_174309g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Mp1g05690.1 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.05 | Archaeplastida | |
Pp3c11_23140V3.1 | No alias | plastid transcriptionally active 17 | 0.02 | Archaeplastida | |
Smo405512 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.05 | Archaeplastida | |
Solyc03g117430.3.1 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.02 | Archaeplastida | |
Zm00001e016143_P001 | No alias | TAC17 cofactor of plastid-encoded RNA polymerase | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
BP | GO:0000910 | cytokinesis | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0003913 | DNA photolyase activity | IEP | Neighborhood |
MF | GO:0004109 | coproporphyrinogen oxidase activity | IEP | Neighborhood |
MF | GO:0004497 | monooxygenase activity | IEP | Neighborhood |
MF | GO:0004655 | porphobilinogen synthase activity | IEP | Neighborhood |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
MF | GO:0004852 | uroporphyrinogen-III synthase activity | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Neighborhood |
BP | GO:0006457 | protein folding | IEP | Neighborhood |
BP | GO:0006470 | protein dephosphorylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0007010 | cytoskeleton organization | IEP | Neighborhood |
MF | GO:0008017 | microtubule binding | IEP | Neighborhood |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Neighborhood |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
BP | GO:0008150 | biological_process | IEP | Neighborhood |
BP | GO:0008152 | metabolic process | IEP | Neighborhood |
BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Neighborhood |
CC | GO:0009507 | chloroplast | IEP | Neighborhood |
CC | GO:0009536 | plastid | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
MF | GO:0010277 | chlorophyllide a oxygenase [overall] activity | IEP | Neighborhood |
MF | GO:0015631 | tubulin binding | IEP | Neighborhood |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Neighborhood |
BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Neighborhood |
MF | GO:0016703 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) | IEP | Neighborhood |
MF | GO:0016829 | lyase activity | IEP | Neighborhood |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Neighborhood |
MF | GO:0016836 | hydro-lyase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Neighborhood |
MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Neighborhood |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Neighborhood |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Neighborhood |
BP | GO:0051186 | cofactor metabolic process | IEP | Neighborhood |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Neighborhood |
MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | Neighborhood |
MF | GO:0051540 | metal cluster binding | IEP | Neighborhood |
BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
No external refs found! |