1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g096680.1.1

Solyc12g096680.1.1


Description : Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana (sp|q9si53|pp147_arath : 926.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000075 (LandPlants) Phylogenetic Tree(s): OG_05_0000075_tree ,
OG_06_0000024 (SeedPlants) Phylogenetic Tree(s): OG_06_0000024_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g096680.1.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00001p00141780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
AMTR_s00022p00232590 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00066p00062930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
AMTR_s00127p00016340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 Archaeplastida
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 Archaeplastida
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
GSVIVT01015461001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01023818001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
GSVIVT01028697001 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.02 Archaeplastida
GSVIVT01033654001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Gb_40986 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 Archaeplastida
LOC_Os10g39460.2 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo92008 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo99677 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 222 245
IPR002885 Pentatricopeptide_repeat 487 516
IPR002885 Pentatricopeptide_repeat 421 445
IPR002885 Pentatricopeptide_repeat 321 347
IPR002885 Pentatricopeptide_repeat 349 379
IPR032867 DYW_dom 520 644
IPR002885 Pentatricopeptide_repeat 248 294
IPR002885 Pentatricopeptide_repeat 149 196
No external refs found!