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  5. Solyc12g096910.1.1

Solyc12g096910.1.1


Description : DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum (sp|p38550|rpoc2_tobac : 203.0)


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0001017 (LandPlants) Phylogenetic Tree(s): OG_05_0001017_tree ,
OG_06_0000818 (SeedPlants) Phylogenetic Tree(s): OG_06_0000818_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g096910.1.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.02 Archaeplastida
ATCG00180 RPOC1 DNA-directed RNA polymerase family protein 0.02 Archaeplastida
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.04 Archaeplastida
LOC_Os04g16830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.02 Archaeplastida
Solyc03g095380.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.05 Archaeplastida
Solyc08g014390.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.17 Archaeplastida
Solyc10g011720.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.03 Archaeplastida
Solyc12g062567.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 6 58
No external refs found!