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  5. Solyc12g098190.2.1

Solyc12g098190.2.1


Description : F-box protein PP2-B10 OS=Arabidopsis thaliana (sp|q9zvq6|p2b10_arath : 221.0)


Gene families : OG0000117 (Archaeplastida) Phylogenetic Tree(s): OG0000117_tree ,
OG_05_0000081 (LandPlants) Phylogenetic Tree(s): OG_05_0000081_tree ,
OG_06_0000096 (SeedPlants) Phylogenetic Tree(s): OG_06_0000096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098190.2.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003900001 No alias F-box protein At2g02240 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01019353001 No alias Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os04g48270.3 No alias component FBX of SCF E3 ubiquitin ligase complex 0.02 Archaeplastida
LOC_Os09g35680.1 No alias component FBX of SCF E3 ubiquitin ligase complex 0.02 Archaeplastida
MA_10430103g0010 No alias F-box protein PP2-B1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10434357g0020 No alias F-box protein PP2-B15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10435077g0020 No alias F-box protein PP2-B1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g050990.3.1 No alias F-box protein At2g02240 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0010011 auxin binding IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025886 PP2-like 97 260
IPR001810 F-box_dom 7 47
No external refs found!