Solyc12g098840.3.1


Description : subfamily ABCB transporter


Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0035085 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0031966 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098840.3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263610 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00045p00108620 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 Archaeplastida
AMTR_s00045p00109940 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AMTR_s00090p00165440 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
AT1G02530 PGP12 P-glycoprotein 12 0.03 Archaeplastida
AT3G28345 No alias ABC transporter family protein 0.08 Archaeplastida
AT3G28360 PGP16 P-glycoprotein 16 0.04 Archaeplastida
AT3G55320 PGP20 P-glycoprotein 20 0.01 Archaeplastida
AT3G62150 PGP21 P-glycoprotein 21 0.05 Archaeplastida
AT4G01820 PGP3, MDR3 P-glycoprotein 3 0.07 Archaeplastida
AT4G01830 PGP5 P-glycoprotein 5 0.04 Archaeplastida
AT4G18050 PGP9 P-glycoprotein 9 0.03 Archaeplastida
GSVIVT01015306001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01021365001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
GSVIVT01032578001 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
Gb_02468 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_02469 No alias subfamily ABCB transporter 0.02 Archaeplastida
Gb_07563 No alias subfamily ABCB transporter 0.07 Archaeplastida
Gb_08616 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_08707 No alias subfamily ABCB transporter 0.03 Archaeplastida
Gb_10211 No alias subfamily ABCB transporter 0.05 Archaeplastida
Gb_13908 No alias ABC transporter B family member 10 OS=Arabidopsis... 0.02 Archaeplastida
Gb_18150 No alias auxin efflux transporter (ABCB19). subfamily ABCB transporter 0.03 Archaeplastida
Gb_32125 No alias subfamily ABCB transporter 0.09 Archaeplastida
Gb_33057 No alias subfamily ABCB transporter 0.07 Archaeplastida
Gb_33058 No alias subfamily ABCB transporter 0.06 Archaeplastida
Gb_36497 No alias subfamily ABCB transporter 0.04 Archaeplastida
Gb_38960 No alias subfamily ABCB transporter 0.03 Archaeplastida
LOC_Os01g18670.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
LOC_Os01g34970.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
LOC_Os01g50160.1 No alias subfamily ABCB transporter 0.05 Archaeplastida
LOC_Os01g52550.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
LOC_Os02g09720.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
LOC_Os02g46680.1 No alias subfamily ABCB transporter 0.03 Archaeplastida
LOC_Os04g38570.1 No alias auxin efflux transporter (ABCB19) 0.02 Archaeplastida
LOC_Os04g54930.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
MA_10432922g0010 No alias subfamily ABCB transporter 0.05 Archaeplastida
MA_10436810g0020 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_107576g0010 No alias subfamily ABCB transporter 0.03 Archaeplastida
MA_560534g0010 No alias No annotation 0.02 Archaeplastida
MA_79399g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 Archaeplastida
Mp2g11920.1 No alias subfamily ABCB transporter 0.02 Archaeplastida
Pp3c17_16450V3.1 No alias ATP binding cassette subfamily B19 0.02 Archaeplastida
Pp3c1_7215V3.1 No alias ATP binding cassette subfamily B19 0.02 Archaeplastida
Smo123915 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Smo176522 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo231714 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo410515 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Smo419451 No alias Solute transport.primary active transport.ABC... 0.01 Archaeplastida
Smo99885 No alias Solute transport.primary active transport.ABC... 0.02 Archaeplastida
Solyc03g122070.3.1 No alias subfamily ABCB transporter 0.01 Archaeplastida
Solyc06g009280.1.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Solyc06g009290.4.1 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e006786_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e020070_P001 No alias subfamily ABCB transporter 0.03 Archaeplastida
Zm00001e025438_P001 No alias subfamily ABCB transporter 0.04 Archaeplastida
Zm00001e028117_P001 No alias subfamily ABCB transporter 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0035434 copper ion transmembrane transport IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 62 336
IPR011527 ABC1_TM_dom 714 981
IPR003439 ABC_transporter-like 1054 1204
IPR003439 ABC_transporter-like 404 552
No external refs found!