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  5. AMTR_s00033p00212490

AMTR_s00033p00212490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.186

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor


Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00212490
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT5G02460 No alias Dof-type zinc finger DNA-binding family protein 0.03 Archaeplastida
AT5G60200 TMO6 TARGET OF MONOPTEROS 6 0.03 Archaeplastida
GSVIVT01021086001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
GSVIVT01038591001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
LOC_Os03g60630.1 No alias transcription factor (DOF) 0.04 Archaeplastida
Solyc02g077960.3.1 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e007228_P002 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e010454_P001 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e011750_P002 No alias transcription factor (DOF) 0.03 Archaeplastida
Zm00001e015597_P001 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e018163_P001 No alias transcription factor (DOF) 0.05 Archaeplastida
Zm00001e027634_P002 No alias transcription factor (DOF) 0.02 Archaeplastida
Zm00001e029641_P001 No alias transcription factor (DOF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
InterPro domains Description Start Stop
IPR003851 Znf_Dof 27 88
No external refs found!