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  5. GSVIVT01000175001

GSVIVT01000175001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000175001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G77950 AGL67 AGAMOUS-like 67 0.03 Archaeplastida
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT2G26320 AGL33 AGAMOUS-like 33 0.02 Archaeplastida
AT4G37435 No alias No description available 0.03 Archaeplastida
AT5G13790 AGL15 AGAMOUS-like 15 0.05 Archaeplastida
Gb_31417 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10332736g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_113509g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c12_22500V3.1 No alias K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c17_5920V3.1 No alias K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.04 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g028020.3.1 No alias No annotation 0.04 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e022819_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0004451 isocitrate lyase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006721 terpenoid metabolic process IEP Neighborhood
BP GO:0006808 regulation of nitrogen utilization IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Neighborhood
BP GO:0016114 terpenoid biosynthetic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016833 oxo-acid-lyase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 55
No external refs found!