GSVIVT01000178001

Description : RNA processing.organelle machineries.RNA editing.plastidial RNA editing.OTP80 RNA editing factor

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01000178001
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00263110	No alias	Pentatricopeptide repeat-containing protein At1g03540...	0.03	Archaeplastida
AMTR_s00010p00220510	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00011p00266560	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
AMTR_s00012p00252800	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
AMTR_s00014p00068600	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g43980,...	0.02	Archaeplastida
AMTR_s00022p00127120	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g09040,...	0.04	Archaeplastida
AMTR_s00024p00225420	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
AMTR_s00025p00155620	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g33170...	0.03	Archaeplastida
AMTR_s00032p00177680	evm_27.TU.AmTr_v1...	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
AMTR_s00032p00219990	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.02	Archaeplastida
AMTR_s00038p00071780	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g26540...	0.03	Archaeplastida
AMTR_s00039p00023570	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.02	Archaeplastida
AMTR_s00046p00214930	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
AMTR_s00051p00085060	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g16610...	0.02	Archaeplastida
AMTR_s00061p00127300	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
AMTR_s00063p00172440	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
AMTR_s00071p00184210	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
AMTR_s00077p00031710	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
AMTR_s00098p00155650	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g39350...	0.03	Archaeplastida
AMTR_s00129p00082590	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g19720...	0.04	Archaeplastida
AMTR_s00130p00019530	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.16	Archaeplastida
AT1G18485	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.08	Archaeplastida
AT3G22150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT3G23330	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G29230	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.09	Archaeplastida
AT3G57430	OTP84	Tetratricopeptide repeat (TPR)-like superfamily protein	0.1	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.06	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.09	Archaeplastida
AT5G55740	CRR21	Tetratricopeptide repeat (TPR)-like superfamily protein	0.09	Archaeplastida
GSVIVT01007974001	No alias	Pentatricopeptide repeat-containing protein At5g61400...	0.03	Archaeplastida
GSVIVT01010898001	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.02	Archaeplastida
Gb_00776	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.04	Archaeplastida
Gb_05264	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_17294	No alias	RNA editing factor (MEF3)	0.02	Archaeplastida
Gb_21745	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
Gb_21949	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_22477	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Gb_29872	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.06	Archaeplastida
Gb_40381	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os01g62910.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.03	Archaeplastida
LOC_Os02g50280.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.08	Archaeplastida
LOC_Os03g04390.1	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.09	Archaeplastida
LOC_Os03g44210.2	No alias	RNA editing factor (SEL1/PDM1)	0.05	Archaeplastida
LOC_Os03g58100.1	No alias	RNA editing factor (OTP85)	0.02	Archaeplastida
LOC_Os03g59264.1	No alias	lectin chaperone (CRT)	0.09	Archaeplastida
LOC_Os04g02850.1	No alias	RNA editing factor (OTP84)	0.04	Archaeplastida
LOC_Os04g39410.1	No alias	RNA editing factor (OTP86)	0.1	Archaeplastida
LOC_Os04g51350.1	No alias	RNA editing factor (AEF1)	0.03	Archaeplastida
LOC_Os05g12130.1	No alias	RNA editing factor (ECD1)	0.06	Archaeplastida
LOC_Os05g49920.1	No alias	RNA editing factor (ECB2/VAC1)	0.08	Archaeplastida
LOC_Os05g50950.1	No alias	Pentatricopeptide repeat-containing protein At4g01030,...	0.07	Archaeplastida
LOC_Os07g02280.1	No alias	RNA editing factor (OTP80)	0.06	Archaeplastida
LOC_Os07g09370.1	No alias	RNA editing factor (CRR28)	0.03	Archaeplastida
LOC_Os10g33730.1	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.06	Archaeplastida
MA_10164206g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_10431227g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_123466g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_135075g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_140208g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_1673g0010	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.02	Archaeplastida
MA_20622g0010	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
MA_31170g0010	No alias	RNA editing factor (MEF19)	0.03	Archaeplastida
MA_3612g0010	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
MA_381817g0020	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
MA_4438g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.06	Archaeplastida
MA_474261g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.02	Archaeplastida
MA_525914g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_653417g0010	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
MA_72886g0010	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.02	Archaeplastida
MA_7550g0010	No alias	Pentatricopeptide repeat-containing protein At4g25270,...	0.03	Archaeplastida
MA_81514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
MA_94165g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
MA_9526611g0020	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Pp3c22_1710V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Archaeplastida
Pp3c24_8560V3.1	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo100621	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
Smo104851	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Smo105356	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	Archaeplastida
Smo34426	No alias	Pentatricopeptide repeat-containing protein At4g14820...	0.03	Archaeplastida
Smo399	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.02	Archaeplastida
Smo47998	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.04	Archaeplastida
Smo84657	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
Smo86032	No alias	Pentatricopeptide repeat-containing protein At5g40410,...	0.03	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.03	Archaeplastida
Smo98955	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.02	Archaeplastida
Solyc01g007850.2.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Solyc01g081110.4.1	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
Solyc01g097670.4.1	No alias	RNA editing factor (ECD1)	0.04	Archaeplastida
Solyc01g098150.3.1	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.1	Archaeplastida
Solyc02g088470.1.1	No alias	Pentatricopeptide repeat-containing protein At3g29230...	0.03	Archaeplastida
Solyc03g025700.2.1	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Solyc03g111210.4.1	No alias	RNA editing factor (OTP80)	0.07	Archaeplastida
Solyc03g114660.1.1	No alias	Pentatricopeptide repeat-containing protein At1g18485...	0.04	Archaeplastida
Solyc03g119950.1.1	No alias	RNA editing factor (ECB2/VAC1)	0.05	Archaeplastida
Solyc04g076800.3.1	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Solyc05g006800.2.1	No alias	Pentatricopeptide repeat-containing protein At1g59720,...	0.08	Archaeplastida
Solyc05g013200.1.1	No alias	RNA editing factor (OTP85)	0.03	Archaeplastida
Solyc08g013850.1.1	No alias	RNA editing factor (CRR21)	0.06	Archaeplastida
Solyc08g014100.1.1	No alias	Pentatricopeptide repeat-containing protein At5g43790...	0.03	Archaeplastida
Solyc09g082450.1.1	No alias	RNA editing factor (YS1)	0.06	Archaeplastida
Solyc11g008940.1.1	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.06	Archaeplastida
Solyc11g017370.3.1	No alias	RNA editing factor (AEF1)	0.03	Archaeplastida
Solyc11g066920.1.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.07	Archaeplastida
Solyc12g006575.1.1	No alias	RNA editing factor (OTP82)	0.06	Archaeplastida
Zm00001e000301_P001	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.04	Archaeplastida
Zm00001e001918_P001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.05	Archaeplastida
Zm00001e002505_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e002552_P001	No alias	RNA editing factor (SEL1/PDM1)	0.04	Archaeplastida
Zm00001e003605_P001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.06	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e005067_P001	No alias	Pentatricopeptide repeat-containing protein At2g42920,...	0.02	Archaeplastida
Zm00001e006389_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e007042_P001	No alias	RNA editing factor (AEF1)	0.08	Archaeplastida
Zm00001e011417_P001	No alias	RNA editing factor (CRR28)	0.03	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
Zm00001e013211_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.02	Archaeplastida
Zm00001e015358_P001	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.04	Archaeplastida
Zm00001e015440_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Zm00001e015727_P001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.03	Archaeplastida
Zm00001e016923_P001	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
Zm00001e018565_P001	No alias	Pentatricopeptide repeat-containing protein At3g13880...	0.04	Archaeplastida
Zm00001e021457_P001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.05	Archaeplastida
Zm00001e023333_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Zm00001e023498_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Zm00001e023504_P001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Zm00001e026608_P001	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
Zm00001e027978_P001	No alias	RNA editing factor (MEF1)	0.03	Archaeplastida
Zm00001e029186_P001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.13	Archaeplastida
Zm00001e029819_P003	No alias	RNA editing factor (CRR22)	0.03	Archaeplastida
Zm00001e030704_P001	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.04	Archaeplastida
Zm00001e030831_P001	No alias	Pentatricopeptide repeat-containing protein At3g20730...	0.03	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.06	Archaeplastida
Zm00001e031660_P001	No alias	Pentatricopeptide repeat-containing protein At4g14170...	0.04	Archaeplastida
Zm00001e032499_P001	No alias	no hits & (original description: none)	0.14	Archaeplastida
Zm00001e034445_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.08	Archaeplastida
Zm00001e035419_P001	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.02	Archaeplastida
Zm00001e035616_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e036301_P001	No alias	Pentatricopeptide repeat-containing protein At4g30700...	0.05	Archaeplastida
Zm00001e040920_P001	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.02	Archaeplastida
Zm00001e041048_P001	No alias	RNA editing factor (OTP86)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	155	200
IPR002885	Pentatricopeptide_repeat	254	301
IPR002885	Pentatricopeptide_repeat	125	153
IPR002885	Pentatricopeptide_repeat	96	122
IPR002885	Pentatricopeptide_repeat	329	353
IPR032867	DYW_dom	428	551

External Links

No external refs found!

GSVIVT01000178001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation