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  5. GSVIVT01000226001

GSVIVT01000226001


Description : Cell cycle.regulation.cyclins.CYCD-type cyclin


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0007997 (LandPlants) Phylogenetic Tree(s): OG_05_0007997_tree ,
OG_06_0005800 (SeedPlants) Phylogenetic Tree(s): OG_06_0005800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000226001
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00148150 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AMTR_s00135p00066200 evm_27.TU.AmTr_v1... Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
AT3G50070 CYCD3;3 CYCLIN D3;3 0.04 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.03 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.04 Archaeplastida
GSVIVT01003610001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Gb_37608 No alias cyclin (CYCD) 0.06 Archaeplastida
LOC_Os07g37010.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.05 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.04 Archaeplastida
Pp3c15_17470V3.1 No alias CYCLIN D1;1 0.03 Archaeplastida
Pp3c9_8300V3.1 No alias CYCLIN D1;1 0.04 Archaeplastida
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 Archaeplastida
Smo412774 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Solyc01g107730.3.1 No alias cyclin (CYCD) 0.02 Archaeplastida
Solyc02g092980.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Solyc04g078470.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e000749_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003835_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e034405_P005 No alias cyclin (CYCD) 0.08 Archaeplastida
Zm00001e035575_P002 No alias cyclin (CYCD) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 29 133
IPR004367 Cyclin_C-dom 135 245
No external refs found!