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  5. GSVIVT01000386001

GSVIVT01000386001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.zf-HD transcription factor


Gene families : OG0000209 (Archaeplastida) Phylogenetic Tree(s): OG0000209_tree ,
OG_05_0000122 (LandPlants) Phylogenetic Tree(s): OG_05_0000122_tree ,
OG_06_0000088 (SeedPlants) Phylogenetic Tree(s): OG_06_0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000386001
Cluster HCCA: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00261450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00038p00027320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00070p00154800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
LOC_Os08g37400.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
LOC_Os09g29130.1 No alias transcription factor (zf-HD) 0.02 Archaeplastida
MA_461761g0010 No alias transcription factor (zf-HD) 0.02 Archaeplastida
Zm00001e003837_P001 No alias transcription factor (zf-HD) 0.07 Archaeplastida
Zm00001e034119_P001 No alias transcription factor (zf-HD) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 5 52
No external refs found!