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  5. GSVIVT01000525001

GSVIVT01000525001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0002214 (SeedPlants) Phylogenetic Tree(s): OG_06_0002214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000525001
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT2G47280 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01009729001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01015022001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.06 Archaeplastida
Gb_39595 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g46190.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g19430.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c10_19460V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c5_23400V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Solyc02g075620.4.1 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e004804_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
BP GO:0006189 'de novo' IMP biosynthetic process IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 45 323
No external refs found!