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Description : Cell wall.pectin.modification and degradation.pectate lyase
Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01000592001 | |
| Cluster | HCCA: Cluster_183 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G07010 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| AT5G48900 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| GSVIVT01008053001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| GSVIVT01020067001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| GSVIVT01020068001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.02 | Archaeplastida | |
| Gb_19802 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| LOC_Os02g12300.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| LOC_Os06g38510.2 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10205415g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10430145g0030 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10437227g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_10437227g0030 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_170547g0010 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| MA_203992g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_66914g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| MA_91467g0010 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Mp3g01000.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Mp8g00770.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Mp8g10190.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Pp3c10_20140V3.1 | No alias | Pectin lyase-like superfamily protein | 0.04 | Archaeplastida | |
| Pp3c13_1640V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c14_6710V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c17_16370V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c1_33130V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Pp3c1_35100V3.1 | No alias | Pectin lyase-like superfamily protein | 0.02 | Archaeplastida | |
| Pp3c3_35190V3.1 | No alias | Pectin lyase-like superfamily protein | 0.03 | Archaeplastida | |
| Solyc01g010740.4.1 | No alias | pectate lyase | 0.08 | Archaeplastida | |
| Solyc02g080910.4.1 | No alias | pectate lyase | 0.02 | Archaeplastida | |
| Solyc02g093580.4.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc03g113150.3.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Solyc06g071840.3.1 | No alias | Probable pectate lyase 22 OS=Arabidopsis thaliana... | 0.14 | Archaeplastida | |
| Solyc06g083580.4.1 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Solyc09g008380.3.1 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Solyc09g061890.3.1 | No alias | pectate lyase | 0.06 | Archaeplastida | |
| Solyc11g008140.3.1 | No alias | pectate lyase | 0.04 | Archaeplastida | |
| Zm00001e008755_P002 | No alias | pectate lyase | 0.05 | Archaeplastida | |
| Zm00001e024959_P001 | No alias | pectate lyase | 0.03 | Archaeplastida | |
| Zm00001e037311_P001 | No alias | pectate lyase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0005507 | copper ion binding | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Neighborhood |
| MF | GO:0009055 | electron transfer activity | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0030599 | pectinesterase activity | IEP | Neighborhood |
| BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
| BP | GO:0042545 | cell wall modification | IEP | Neighborhood |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Neighborhood |
| BP | GO:0045229 | external encapsulating structure organization | IEP | Neighborhood |
| BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Neighborhood |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | Neighborhood |
| BP | GO:0071555 | cell wall organization | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 136 | 320 |
| No external refs found! |