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  5. GSVIVT01000821001

GSVIVT01000821001


Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0003526 (SeedPlants) Phylogenetic Tree(s): OG_06_0003526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000821001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00127820 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT3G22310 PMH1, ATRH9 putative mitochondrial RNA helicase 1 0.06 Archaeplastida
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.04 Archaeplastida
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) 0.04 Archaeplastida
Cpa|evm.model.tig00000093.151 No alias DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays 0.03 Archaeplastida
Cpa|evm.model.tig00020734.25 No alias DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.02 Archaeplastida
Gb_10087 No alias DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.04 Archaeplastida
MA_10206082g0010 No alias RNA helicase (PMH) 0.05 Archaeplastida
MA_17924g0010 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.07 Archaeplastida
Pp3c2_2840V3.1 No alias DEAD box RNA helicase (RH3) 0.03 Archaeplastida
Smo99603 No alias DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 Archaeplastida
Solyc08g042050.3.1 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.03 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
Zm00001e018107_P001 No alias RNA helicase (PMH) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 347 454
IPR011545 DEAD/DEAH_box_helicase_dom 139 308
No external refs found!