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  5. GSVIVT01000864001

GSVIVT01000864001


Description : Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana


Gene families : OG0005947 (Archaeplastida) Phylogenetic Tree(s): OG0005947_tree ,
OG_05_0008562 (LandPlants) Phylogenetic Tree(s): OG_05_0008562_tree ,
OG_06_0007299 (SeedPlants) Phylogenetic Tree(s): OG_06_0007299_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000864001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT4G20740 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.1 Archaeplastida
LOC_Os06g13950.1 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.05 Archaeplastida
LOC_Os07g08180.2 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.04 Archaeplastida
Solyc01g068180.3.1 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.09 Archaeplastida
Zm00001e030912_P001 No alias Pentatricopeptide repeat-containing protein At3g61520,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 392
IPR002885 Pentatricopeptide_repeat 399 421
IPR002885 Pentatricopeptide_repeat 220 269
IPR002885 Pentatricopeptide_repeat 290 339
IPR002885 Pentatricopeptide_repeat 501 540
IPR002885 Pentatricopeptide_repeat 637 669
No external refs found!