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  5. GSVIVT01000936001

GSVIVT01000936001


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0011027 (Archaeplastida) Phylogenetic Tree(s): OG0011027_tree ,
OG_05_0010980 (LandPlants) Phylogenetic Tree(s): OG_05_0010980_tree ,
OG_06_0010967 (SeedPlants) Phylogenetic Tree(s): OG_06_0010967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000936001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT2G13600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_00409 No alias RNA editing factor (SLO2) 0.05 Archaeplastida
Gb_02603 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Solyc04g009000.1.1 No alias RNA editing factor (SLO2) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 594 647
IPR002885 Pentatricopeptide_repeat 54 80
IPR002885 Pentatricopeptide_repeat 288 313
IPR002885 Pentatricopeptide_repeat 82 108
IPR002885 Pentatricopeptide_repeat 495 520
IPR002885 Pentatricopeptide_repeat 114 142
IPR002885 Pentatricopeptide_repeat 212 259
IPR002885 Pentatricopeptide_repeat 344 389
IPR002885 Pentatricopeptide_repeat 422 468
No external refs found!