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  5. GSVIVT01001672001

GSVIVT01001672001


Description : Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0001149 (SeedPlants) Phylogenetic Tree(s): OG_06_0001149_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001672001
Cluster HCCA: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00198740 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT5G04280 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Archaeplastida
Cpa|evm.model.tig00020904.44 No alias Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
LOC_Os07g08960.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
MA_10428777g0010 No alias Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.04 Archaeplastida
MA_10436424g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Pp3c12_1830V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Archaeplastida
Solyc05g053780.4.1 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 Archaeplastida
Solyc10g047130.2.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Zm00001e006287_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 10 78
IPR001878 Znf_CCHC 125 141
No external refs found!