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  5. GSVIVT01002746001

GSVIVT01002746001


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0089762 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01002746001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.03 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.03 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.04 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.03 Archaeplastida
Cpa|evm.model.tig00001085.4 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.02 Archaeplastida
Gb_25326 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.03 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_74667g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Pp3c5_1800V3.1 No alias histone H2A 10 0.02 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 14 90
No external refs found!