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  5. GSVIVT01003139001

GSVIVT01003139001


Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG0001575 (Archaeplastida) Phylogenetic Tree(s): OG0001575_tree ,
OG_05_0001718 (LandPlants) Phylogenetic Tree(s): OG_05_0001718_tree ,
OG_06_0001752 (SeedPlants) Phylogenetic Tree(s): OG_06_0001752_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003139001
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT3G54560 HTA11 histone H2A 11 0.14 Archaeplastida
Cpa|evm.model.tig00021108.27 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre13.g567700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_04984 No alias histone (H2A) 0.04 Archaeplastida
LOC_Os03g06670.1 No alias histone (H2A) 0.09 Archaeplastida
LOC_Os10g28230.1 No alias histone (H2A) 0.13 Archaeplastida
Mp1g09020.1 No alias histone (H2A) 0.04 Archaeplastida
Pp3c12_17610V3.1 No alias histone H2A protein 9 0.05 Archaeplastida
Pp3c3_27030V3.1 No alias histone H2A protein 9 0.02 Archaeplastida
Pp3c4_14220V3.1 No alias histone H2A protein 9 0.05 Archaeplastida
Solyc06g084090.4.1 No alias histone (H2A) 0.1 Archaeplastida
Solyc09g065755.1.1 No alias histone (H2A) 0.02 Archaeplastida
Zm00001e005636_P001 No alias histone (H2A) 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 18 103
IPR032454 Histone_H2A_C 104 132
No external refs found!