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  5. GSVIVT01003434001

GSVIVT01003434001


Description : ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0008460 (LandPlants) Phylogenetic Tree(s): OG_05_0008460_tree ,
OG_06_0008037 (SeedPlants) Phylogenetic Tree(s): OG_06_0008037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003434001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00074370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.04 Archaeplastida
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.04 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.06 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.05 Archaeplastida
MA_34468g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
MA_5383g0010 No alias RNA helicase (Prp16) 0.03 Archaeplastida
MA_8723931g0010 No alias RNA helicase (Prp16) 0.03 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.02 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3s62_10V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Smo82212 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.08 Archaeplastida
Zm00001e010450_P001 No alias RNA helicase (Prp16) 0.06 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.05 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 488 607
IPR011545 DEAD/DEAH_box_helicase_dom 285 439
IPR011709 DUF1605 832 910
IPR002867 IBR_dom 1566 1621
IPR007502 Helicase-assoc_dom 669 763
No external refs found!