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  5. GSVIVT01003496001

GSVIVT01003496001


Description : Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0004267 (Archaeplastida) Phylogenetic Tree(s): OG0004267_tree ,
OG_05_0002950 (LandPlants) Phylogenetic Tree(s): OG_05_0002950_tree ,
OG_06_0003235 (SeedPlants) Phylogenetic Tree(s): OG_06_0003235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003496001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00074820 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g16390,... 0.04 Archaeplastida
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AT4G16390 SVR7 pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT5G46580 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.04 Archaeplastida
LOC_Os03g11670.1 No alias Pentatricopeptide repeat-containing protein ATP4... 0.02 Archaeplastida
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.01 Archaeplastida
Pp3c15_12010V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
Pp3c9_6880V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.01 Archaeplastida
Smo10825 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Archaeplastida
Smo442013 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Archaeplastida
Solyc08g077120.2.1 No alias No annotation 0.02 Archaeplastida
Solyc08g077140.1.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 Archaeplastida
Solyc11g012670.1.1 No alias Pentatricopeptide repeat-containing protein At4g16390,... 0.01 Archaeplastida
Zm00001e000850_P001 No alias Pentatricopeptide repeat-containing protein ATP4,... 0.01 Archaeplastida
Zm00001e006409_P001 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 152 173
IPR002885 Pentatricopeptide_repeat 15 44
IPR002885 Pentatricopeptide_repeat 51 78
No external refs found!