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  5. GSVIVT01003861001

GSVIVT01003861001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0002316 (SeedPlants) Phylogenetic Tree(s): OG_06_0002316_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003861001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.02 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Gb_30604 No alias transcription factor (MADS/AGL) 0.11 Archaeplastida
Gb_38920 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.14 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Pp3c8_6890V3.1 No alias AGAMOUS-like 104 0.01 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002487 TF_Kbox 84 170
IPR002100 TF_MADSbox 10 57
No external refs found!