GSVIVT01004006001

Description : Polygalacturonase OS=Prunus persica

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01004006001
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00112760	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and...	0.04	Archaeplastida
GSVIVT01004007001	No alias	Polygalacturonase OS=Prunus persica	0.03	Archaeplastida
GSVIVT01008061001	No alias	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01008062001	No alias	Polygalacturonase OS=Juniperus ashei	0.04	Archaeplastida
GSVIVT01017302001	No alias	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01017307001	No alias	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01032118001	No alias	Cell wall.pectin.modification and...	0.02	Archaeplastida
Solyc02g067640.3.1	No alias	Polygalacturonase OS=Prunus persica...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	49	377

External Links

No external refs found!