GSVIVT01004811001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0000802 (SeedPlants) Phylogenetic Tree(s): OG_06_0000802_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01004811001
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.03 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.04 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.03 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.06 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.03 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Pp3c21_10320V3.1 No alias KNOTTED-like from Arabidopsis thaliana 2 0.02 Archaeplastida
Pp3c5_26440V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Smo159366 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e005825_P002 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 170 209
IPR005540 KNOX1 1 34
IPR005541 KNOX2 47 93
IPR005539 ELK_dom 130 151
No external refs found!