GSVIVT01005197001


Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana


Gene families : OG0001100 (Archaeplastida) Phylogenetic Tree(s): OG0001100_tree ,
OG_05_0001443 (LandPlants) Phylogenetic Tree(s): OG_05_0001443_tree ,
OG_06_0001574 (SeedPlants) Phylogenetic Tree(s): OG_06_0001574_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01005197001
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.06 Archaeplastida
Gb_38929 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
LOC_Os06g50890.1 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
Pp3c1_27480V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 93 162
No external refs found!