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  5. GSVIVT01005260001

GSVIVT01005260001


Description : Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0005569 (LandPlants) Phylogenetic Tree(s): OG_05_0005569_tree ,
OG_06_0015488 (SeedPlants) Phylogenetic Tree(s): OG_06_0015488_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01005260001
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AT5G48910 LPA66 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00021312.67 No alias No description available 0.01 Archaeplastida
GSVIVT01012938001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.01 Archaeplastida
GSVIVT01021374001 No alias Pentatricopeptide repeat-containing protein At5g46460,... 0.01 Archaeplastida
Gb_17428 No alias Pentatricopeptide repeat-containing protein At4g04370... 0.03 Archaeplastida
Gb_31034 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
LOC_Os03g13830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_31170g0010 No alias RNA editing factor (MEF19) 0.02 Archaeplastida
Pp3c24_8560V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Smo76236 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.04 Archaeplastida
Smo83339 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006323 DNA packaging IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0007076 mitotic chromosome condensation IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
BP GO:0030261 chromosome condensation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 183 220
IPR002885 Pentatricopeptide_repeat 285 332
IPR002885 Pentatricopeptide_repeat 53 99
IPR002885 Pentatricopeptide_repeat 151 181
IPR002885 Pentatricopeptide_repeat 360 383
No external refs found!