GSVIVT01006302001


No description available


Gene families : OG0000794 (Archaeplastida) Phylogenetic Tree(s): OG0000794_tree ,
OG_05_0000615 (LandPlants) Phylogenetic Tree(s): OG_05_0000615_tree ,
OG_06_0000503 (SeedPlants) Phylogenetic Tree(s): OG_06_0000503_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006302001
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT1G09890 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
AT4G38030 No alias Rhamnogalacturonate lyase family protein 0.03 Archaeplastida
GSVIVT01009215001 No alias No description available 0.02 Archaeplastida
Gb_00786 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_00787 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_20600 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os08g44040.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g03790.1 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10429122g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10434775g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g03160.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp5g20220.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp7g11130.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c4_23770V3.1 No alias Rhamnogalacturonate lyase family protein 0.04 Archaeplastida
Smo413798 No alias No description available 0.04 Archaeplastida
Solyc04g076640.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc04g076650.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g051350.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g011290.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g011300.2.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc11g011310.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e013992_P006 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
MF GO:0004506 squalene monooxygenase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 3 184
IPR010325 Rhamnogal_lyase 272 320
IPR029411 RG-lyase_III 560 747
IPR029413 RG-lyase_II 475 546
No external refs found!