GSVIVT01006669001


Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS4 component


Gene families : OG0007128 (Archaeplastida) Phylogenetic Tree(s): OG0007128_tree ,
OG_05_0004742 (LandPlants) Phylogenetic Tree(s): OG_05_0004742_tree ,
OG_06_0002990 (SeedPlants) Phylogenetic Tree(s): OG_06_0002990_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006669001
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT2G07734 No alias Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 0.04 Archaeplastida
ATMG00290 RPS4 mitochondrial ribosomal protein S4 0.03 Archaeplastida
Gb_22592 No alias component mtRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
MA_10101694g0010 No alias component mtRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Solyc00g021640.2.1 No alias component mtRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042281_P001 No alias Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e042282_P001 No alias component mtRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e042286_P001 No alias Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e042287_P001 No alias component mtRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e042320_P001 No alias component mtRPS4 of small ribosomal subunit proteome 0.03 Archaeplastida
Zm00001e042321_P001 No alias Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e042501_P001 No alias Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0004129 cytochrome-c oxidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009060 aerobic respiration IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Neighborhood
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0045333 cellular respiration IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 108 152
No external refs found!