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  5. GSVIVT01006709001

GSVIVT01006709001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0002109 (LandPlants) Phylogenetic Tree(s): OG_05_0002109_tree ,
OG_06_0001477 (SeedPlants) Phylogenetic Tree(s): OG_06_0001477_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006709001
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00133410 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.04 Archaeplastida
AT1G45130 BGAL5 beta-galactosidase 5 0.04 Archaeplastida
AT2G28470 BGAL8 beta-galactosidase 8 0.06 Archaeplastida
GSVIVT01015038001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
GSVIVT01033736001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.06 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_11388g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Mp4g01390.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Solyc07g042220.2.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc11g018490.3.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Solyc11g069270.2.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Zm00001e019096_P001 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Neighborhood
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR031330 Gly_Hdrlase_35_cat 167 312
No external refs found!