1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01007665001

GSVIVT01007665001


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0112167 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0090220 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007665001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.09 Archaeplastida
Gb_31459 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.04 Archaeplastida
Solyc03g112350.4.1 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 526 605
IPR011545 DEAD/DEAH_box_helicase_dom 320 491
No external refs found!