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  5. GSVIVT01007715001

GSVIVT01007715001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007715001
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.06 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.05 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.11 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.03 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
LOC_Os03g47022.1 No alias transcription factor (KNOX) 0.05 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.07 Archaeplastida
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.1 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.08 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.14 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.08 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e005825_P002 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e012293_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e012294_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR008422 Homeobox_KN_domain 256 295
IPR005541 KNOX2 132 178
IPR005539 ELK_dom 216 237
IPR005540 KNOX1 79 120
No external refs found!