GSVIVT01007793001

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase

Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001120 (LandPlants) Phylogenetic Tree(s): OG_05_0001120_tree ,
OG_06_0012150 (SeedPlants) Phylogenetic Tree(s): OG_06_0012150_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01007793001
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00185200	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00009p00172890	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00044p00112360	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00056p00122930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00088p00040490	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00102p00069840	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00129p00065710	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AT1G63840	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT3G14320	No alias	Zinc finger, C3HC4 type (RING finger) family protein	0.02	Archaeplastida
AT3G19140	DNF	RING/U-box superfamily protein	0.03	Archaeplastida
AT3G43430	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT3G60966	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT4G09100	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT4G17905	ATL4H	RING/U-box superfamily protein	0.09	Archaeplastida
AT4G24015	No alias	RING/U-box superfamily protein	0.09	Archaeplastida
AT5G06490	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G20885	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G27420	ATL31, CNI1	carbon/nitrogen insensitive 1	0.03	Archaeplastida
AT5G41440	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G43420	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
AT5G58580	ATL63, TL63	TOXICOS EN LEVADURA 63	0.04	Archaeplastida
GSVIVT01009096001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01012020001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01027769001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_04301	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_04645	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_14778	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_14821	No alias	RHA2 signal transducer of abscisic acid perception	0.02	Archaeplastida
Gb_20461	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Gb_36232	No alias	IDF1 iron uptake IRT1-ubiquitin ligase	0.03	Archaeplastida
Gb_40644	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os01g11520.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os01g16120.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os01g55110.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os02g14990.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os02g36330.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os02g45710.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os02g45780.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os02g46100.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os02g58540.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os03g05560.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
LOC_Os03g05570.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os04g16970.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os04g37740.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os04g49700.1	No alias	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os05g29710.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os06g06150.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os06g07100.2	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os06g09310.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
LOC_Os06g34530.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os07g48680.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os08g44950.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os09g37050.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os11g39640.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os12g40460.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10145129g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10427748g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_129478g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_133839g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_152783g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_159453g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_201391g0010	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.03	Archaeplastida
MA_308999g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_37578g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_43543g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_611616g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_7120568g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_80729g0030	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_8556123g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_9764263g0010	No alias	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Mp6g19130.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c14_14600V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c20_12240V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c21_17280V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c22_15440V3.1	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c26_11650V3.1	No alias	TOXICOS EN LEVADURA 2	0.04	Archaeplastida
Pp3c4_30240V3.1	No alias	TOXICOS EN LEVADURA 2	0.04	Archaeplastida
Smo412607	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
Solyc01g066430.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc01g100100.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc01g105620.4.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g067700.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc06g061250.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc08g082680.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc09g066300.3.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc12g055710.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e000398_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e003126_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e007103_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e007956_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e008560_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e011901_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e014832_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e015259_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e015449_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e016470_P001	No alias	no hits & (original description: none)	0.06	Archaeplastida
Zm00001e019779_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e022742_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023908_P006	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0005319	lipid transporter activity	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
MF	GO:0045735	nutrient reservoir activity	IEP	Neighborhood
BP	GO:0061024	membrane organization	IEP	Neighborhood
BP	GO:0120009	intermembrane lipid transfer	IEP	Neighborhood
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	603	646
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	317	481

External Links

No external refs found!

GSVIVT01007793001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation