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  5. GSVIVT01007812001

GSVIVT01007812001


Description : RNA biosynthesis.transcriptional activation.LIM transcription factor


Gene families : OG0000926 (Archaeplastida) Phylogenetic Tree(s): OG0000926_tree ,
OG_05_0000998 (LandPlants) Phylogenetic Tree(s): OG_05_0000998_tree ,
OG_06_0003820 (SeedPlants) Phylogenetic Tree(s): OG_06_0003820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007812001
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.03 Archaeplastida
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.04 Archaeplastida
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.04 Archaeplastida
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.05 Archaeplastida
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.03 Archaeplastida
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.06 Archaeplastida
GSVIVT01026849001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.01 Archaeplastida
Gb_09450 No alias transcription factor (LIM) 0.06 Archaeplastida
LOC_Os02g42820.1 No alias transcription factor (LIM) 0.04 Archaeplastida
LOC_Os04g45010.1 No alias transcription factor (LIM) 0.06 Archaeplastida
LOC_Os10g35930.1 No alias transcription factor (LIM) 0.04 Archaeplastida
MA_10428887g0010 No alias transcription factor (LIM) 0.02 Archaeplastida
Solyc01g094320.3.1 No alias transcription factor (LIM) 0.03 Archaeplastida
Solyc08g007940.4.1 No alias transcription factor (LIM) 0.05 Archaeplastida
Solyc11g044740.2.1 No alias transcription factor (LIM) 0.06 Archaeplastida
Zm00001e018310_P001 No alias transcription factor (LIM) 0.03 Archaeplastida
Zm00001e041310_P001 No alias transcription factor (LIM) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001781 Znf_LIM 107 162
IPR001781 Znf_LIM 11 65
No external refs found!