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Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase
Gene families : OG0001854 (Archaeplastida) Phylogenetic Tree(s): OG0001854_tree ,
OG_05_0005415 (LandPlants) Phylogenetic Tree(s): OG_05_0005415_tree ,
OG_06_0006816 (SeedPlants) Phylogenetic Tree(s): OG_06_0006816_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01007870001 | |
| Cluster | HCCA: Cluster_201 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G61060 | ATHDA5, HDA05, HDA5 | histone deacetylase 5 | 0.03 | Archaeplastida | |
| Cpa|evm.model.tig00000093.133 | No alias | Histone deacetylase 5 OS=Arabidopsis thaliana | 0.01 | Archaeplastida | |
| Gb_00466 | No alias | class-II histone deacetylase | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| MF | GO:0003852 | 2-isopropylmalate synthase activity | IEP | Neighborhood |
| MF | GO:0004518 | nuclease activity | IEP | Neighborhood |
| MF | GO:0004540 | ribonuclease activity | IEP | Neighborhood |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Neighborhood |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006551 | leucine metabolic process | IEP | Neighborhood |
| BP | GO:0008037 | cell recognition | IEP | Neighborhood |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Neighborhood |
| MF | GO:0008536 | Ran GTPase binding | IEP | Neighborhood |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Neighborhood |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Neighborhood |
| BP | GO:0009098 | leucine biosynthetic process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0017016 | Ras GTPase binding | IEP | Neighborhood |
| MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
| BP | GO:0022414 | reproductive process | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Neighborhood |
| MF | GO:0031267 | small GTPase binding | IEP | Neighborhood |
| BP | GO:0043631 | RNA polyadenylation | IEP | Neighborhood |
| CC | GO:0044451 | nucleoplasm part | IEP | Neighborhood |
| MF | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | IEP | Neighborhood |
| BP | GO:0048544 | recognition of pollen | IEP | Neighborhood |
| MF | GO:0051020 | GTPase binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023801 | His_deacetylse_dom | 33 | 331 |
| No external refs found! |