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  5. GSVIVT01008016001

GSVIVT01008016001


Description : Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008016001
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.07 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.07 Archaeplastida
AMTR_s00037p00138240 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20090... 0.04 Archaeplastida
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G17525 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.06 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.06 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 Archaeplastida
Gb_38399 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.05 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.09 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.09 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.05 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.06 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 Archaeplastida
MA_56119g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.08 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
Solyc09g014210.3.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.1 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.05 Archaeplastida
Solyc11g068470.3.1 No alias group-II intron mitochondrial splicing factor (MISF74) 0.03 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 Archaeplastida
Zm00001e028030_P001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007064 mitotic sister chromatid cohesion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 528 577
IPR002885 Pentatricopeptide_repeat 283 332
IPR002885 Pentatricopeptide_repeat 458 507
IPR002885 Pentatricopeptide_repeat 214 263
IPR002885 Pentatricopeptide_repeat 109 158
IPR002885 Pentatricopeptide_repeat 388 437
IPR002885 Pentatricopeptide_repeat 601 648
IPR002885 Pentatricopeptide_repeat 182 212
IPR002885 Pentatricopeptide_repeat 83 103
IPR002885 Pentatricopeptide_repeat 673 702
IPR002885 Pentatricopeptide_repeat 349 380
No external refs found!