HCCA Cluster_77 0.028 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_78 0.043 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_81 0.026 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_85 0.025 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_88 0.02 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_91 0.031 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_92 0.071 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_99 0.025 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_100 0.039 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_101 0.019 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_104 0.027 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_115 0.029 Archaeplastida Compare Solanum lycopersicum HCCA Cluster_120 0.034 Archaeplastida Compare GSVIVT01008107001 details

GSVIVT01008107001


No description available


Gene families : OG0000605 (Archaeplastida) Phylogenetic Tree(s): OG0000605_tree ,
OG_05_0001455 (LandPlants) Phylogenetic Tree(s): OG_05_0001455_tree ,
OG_06_0001520 (SeedPlants) Phylogenetic Tree(s): OG_06_0001520_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Cluster_164
Type Description Actions
Neighborhood HRR: GSVIVT01008107001
Cluster HCCA:

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.13 No alias No description available 0.02 Archaeplastida
Cre02.g092400 No alias No description available 0.02 Archaeplastida
LOC_Os04g30430.1 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Pp3c26_10520V3.1 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.02 Archaeplastida
Zm00001e008436_P002 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Zm00001e040697_P001 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 340 397
IPR002075 NTF2 50 166
No external refs found!