Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.mitochondrial ribosome-associated proteins.PPR-type regulatory protein (PNM1)

Gene families : OG0008087 (Archaeplastida) Phylogenetic Tree(s): OG0008087_tree ,
OG_05_0006682 (LandPlants) Phylogenetic Tree(s): OG_05_0006682_tree ,
OG_06_0003761 (SeedPlants) Phylogenetic Tree(s): OG_06_0003761_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: GSVIVT01008125001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT5G60960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_15858 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.02 Archaeplastida
LOC_Os07g41260.1 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.03 Archaeplastida
Solyc03g114920.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.03 Archaeplastida
Zm00001e010734_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PNM1) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 414 454
IPR002885 Pentatricopeptide_repeat 335 381
IPR002885 Pentatricopeptide_repeat 264 290
No external refs found!