GSVIVT01008257001

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.cPTH splicing factor

Gene families : OG0001167 (Archaeplastida) Phylogenetic Tree(s): OG0001167_tree ,
OG_05_0001323 (LandPlants) Phylogenetic Tree(s): OG_05_0001323_tree ,
OG_06_0000992 (SeedPlants) Phylogenetic Tree(s): OG_06_0000992_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01008257001
Cluster	HCCA: Cluster_201

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g04130.1	No alias	Chloroplastic group IIB intron splicing facilitator...	0.01	Archaeplastida
LOC_Os01g49900.1	No alias	cPTH plastidial RNA splicing factor	0.04	Archaeplastida
Solyc02g086150.4.1	No alias	component CRS2 of CRS2-CAF plastidial RNA splicing...	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001328	Pept_tRNA_hydro	114	292

External Links

No external refs found!