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  5. GSVIVT01008284001

GSVIVT01008284001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000724 (Archaeplastida) Phylogenetic Tree(s): OG0000724_tree ,
OG_05_0000483 (LandPlants) Phylogenetic Tree(s): OG_05_0000483_tree ,
OG_06_0000437 (SeedPlants) Phylogenetic Tree(s): OG_06_0000437_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008284001
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G67100 LBD40 LOB domain-containing protein 40 0.04 Archaeplastida
AT3G02550 LBD41 LOB domain-containing protein 41 0.07 Archaeplastida
Gb_36942 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Gb_36943 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os01g32770.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os03g33090.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_19934g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_3661g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_711157g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c5_6300V3.1 No alias LOB domain-containing protein 37 0.04 Archaeplastida
Solyc02g085910.4.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Solyc03g119530.3.1 No alias transcription factor (AS2/LOB) 0.15 Archaeplastida
Zm00001e001981_P001 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Zm00001e005129_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e027415_P001 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Zm00001e027417_P001 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Zm00001e032150_P001 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 4 102
No external refs found!