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  5. GSVIVT01008288001

GSVIVT01008288001


Description : Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit


Gene families : OG0000561 (Archaeplastida) Phylogenetic Tree(s): OG0000561_tree ,
OG_05_0000421 (LandPlants) Phylogenetic Tree(s): OG_05_0000421_tree ,
OG_06_0001423 (SeedPlants) Phylogenetic Tree(s): OG_06_0001423_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008288001
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.13 Archaeplastida
AT1G67090 RBCS1A ribulose bisphosphate carboxylase small chain 1A 0.14 Archaeplastida
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.16 Archaeplastida
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.1 Archaeplastida
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.14 Archaeplastida
Cre02.g120100 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 Archaeplastida
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida
LOC_Os12g17600.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.13 Archaeplastida
LOC_Os12g19381.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.12 Archaeplastida
LOC_Os12g19470.2 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 Archaeplastida
Mp4g06030.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 Archaeplastida
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 Archaeplastida
Mp4g10850.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 Archaeplastida
Mp4g15080.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
Pp3c13_15786V3.1 No alias No annotation 0.1 Archaeplastida
Pp3c13_15800V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.09 Archaeplastida
Pp3c13_15980V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Archaeplastida
Pp3c13_16000V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.08 Archaeplastida
Pp3c13_16130V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Archaeplastida
Pp3c15_22720V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Archaeplastida
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.04 Archaeplastida
Pp3c2_4100V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.04 Archaeplastida
Pp3c3_14510V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.12 Archaeplastida
Pp3c3_18750V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.11 Archaeplastida
Pp3c3_20110V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Archaeplastida
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.07 Archaeplastida
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.05 Archaeplastida
Solyc02g063150.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.13 Archaeplastida
Solyc02g085950.4.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 Archaeplastida
Solyc03g034220.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.13 Archaeplastida
Zm00001e009125_P001 No alias no hits & (original description: none) 0.11 Archaeplastida
Zm00001e024168_P001 No alias no hits & (original description: none) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004089 carbonate dehydratase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010109 regulation of photosynthesis IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0010242 oxygen evolving activity IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042548 regulation of photosynthesis, light reaction IEP Neighborhood
BP GO:0042549 photosystem II stabilization IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR024680 RuBisCO_ssu_N 1 23
IPR000894 RuBisCO_sc_dom 48 156
No external refs found!