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Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.131
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL28 component
Gene families : OG0003075 (Archaeplastida) Phylogenetic Tree(s): OG0003075_tree ,
OG_05_0003467 (LandPlants) Phylogenetic Tree(s): OG_05_0003467_tree ,
OG_06_0004175 (SeedPlants) Phylogenetic Tree(s): OG_06_0004175_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00036p00210210 | |
| Cluster | HCCA: Cluster_210 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G19730 | No alias | Ribosomal L28e protein family | 0.12 | Archaeplastida | |
| AT4G29410 | No alias | Ribosomal L28e protein family | 0.1 | Archaeplastida | |
| Cpa|evm.model.tig00020710.93 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | Archaeplastida | |
| Cre11.g467578 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.09 | Archaeplastida | |
| GSVIVT01016895001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | Archaeplastida | |
| GSVIVT01035350001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | Archaeplastida | |
| Gb_38783 | No alias | component RPL28 of LSU proteome component | 0.06 | Archaeplastida | |
| LOC_Os02g57540.1 | No alias | component RPL28 of LSU proteome component | 0.07 | Archaeplastida | |
| LOC_Os05g46430.1 | No alias | component RPL28 of LSU proteome component | 0.1 | Archaeplastida | |
| MA_10428490g0010 | No alias | component RPL28 of LSU proteome component | 0.06 | Archaeplastida | |
| Mp1g26940.1 | No alias | component RPL28 of LSU proteome component | 0.11 | Archaeplastida | |
| Pp3c14_10480V3.1 | No alias | Ribosomal L28e protein family | 0.12 | Archaeplastida | |
| Pp3c17_14060V3.1 | No alias | Ribosomal L28e protein family | 0.15 | Archaeplastida | |
| Pp3c1_29070V3.1 | No alias | Ribosomal L28e protein family | 0.06 | Archaeplastida | |
| Pp3c2_6100V3.1 | No alias | Ribosomal L28e protein family | 0.05 | Archaeplastida | |
| Smo164298 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | Archaeplastida | |
| Solyc03g121330.3.1 | No alias | component RPL28 of LSU proteome component | 0.07 | Archaeplastida | |
| Solyc06g062500.4.1 | No alias | component RPL28 of LSU proteome component | 0.05 | Archaeplastida | |
| Solyc12g044720.2.1 | No alias | component RPL28 of LSU proteome component | 0.06 | Archaeplastida | |
| Zm00001e026410_P001 | No alias | component RPL28 of LSU proteome component | 0.1 | Archaeplastida | |
| Zm00001e032283_P002 | No alias | component RPL28 of LSU proteome component | 0.1 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | Neighborhood |
| MF | GO:0000179 | rRNA (adenine-N6,N6-)-dimethyltransferase activity | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005622 | intracellular | IEP | Neighborhood |
| CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
| CC | GO:0005779 | integral component of peroxisomal membrane | IEP | Neighborhood |
| CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006414 | translational elongation | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0007031 | peroxisome organization | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| MF | GO:0016433 | rRNA (adenine) methyltransferase activity | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| CC | GO:0031231 | intrinsic component of peroxisomal membrane | IEP | Neighborhood |
| CC | GO:0031300 | intrinsic component of organelle membrane | IEP | Neighborhood |
| CC | GO:0031301 | integral component of organelle membrane | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044438 | microbody part | IEP | Neighborhood |
| CC | GO:0044439 | peroxisomal part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901575 | organic substance catabolic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |